1AXT Immunoglobulin date Oct 20, 1997
title Immune Versus Natural Selection: Antibody Aldolases With The Rates Of Natural Enzymes
authors A.Heine, I.A.Wilson
compound source
Molecule: Immunoglobulin Igg2a
Chain: L
Fragment: Fab' Fragment 33f12
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Other_details: Monoclonal Antibody Igg2a Fab' Fragment

Molecule: Immunoglobulin Igg2a
Chain: H
Fragment: Fab' Fragment 33f12

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Other_details: Monoclonal Antibody Igg2a Fab' Fragment
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.500 65.300 132.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
related structures by homologous chain: 1F8T, 1IVL, 1VPO
Primary referenceImmune versus natural selection: antibody aldolases with enzymic rates but broader scope., Barbas CF 3rd, Heine A, Zhong G, Hoffmann T, Gramatikova S, Bjornestedt R, List B, Anderson J, Stura EA, Wilson IA, Lerner RA, Science 1997 Dec 19;278(5346):2085-92. PMID:9405338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1axt.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 1AXT
  • Likely Quarternary Molecular Structure file(s) for 1AXT
  • Retrieve 1AXT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AXT from S2C, [Save to disk]
  • View 1AXT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AXT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AXT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1axth1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1axth2, region H:114-228 [Jmol] [rasmolscript] [script source]
        - Domain d1axtl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1axtl2, region L:108-211 [Jmol] [rasmolscript] [script source]
  • Fold representative 1axt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1axt] [1axt_L] [1axt_H]
  • SWISS-PROT database: [P01865]
  • Domain organization of [GCAM_MOUSE] by SWISSPFAM
  • Domains found in 1AXT: [IG_like] [IGv ] by SMART
  • Other resources with information on 1AXT
  • Community annotation for 1AXT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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