1AYJ Fungicide date Nov 05, 1997
title Determination Of The Three-Dimensional Solution Structure Of Sativus Antifungal Protein 1 (Rs-Afp1) By 1h Nmr, 20 Struct
authors F.Fant, F.A.M.Borremans
compound source
Molecule: Antifungal Protein 1
Chain: A
Synonym: Rs-Afp1
Organism_scientific: Raphanus Sativus Var. Niger
Organism_common: Chinese Radish
Organism_taxid: 41679
Strain: Var. Niger
Organ: Seed
methodSolution NMR
ligand PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDetermination of the three-dimensional solution structure of Raphanus sativus antifungal protein 1 by 1H NMR., Fant F, Vranken W, Broekaert W, Borremans F, J Mol Biol 1998 May 29;279(1):257-70. PMID:9636715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (1ayj.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1AYJ
  • CSU: Contacts of Structural Units for 1AYJ
  • Original NMR restraints for 1AYJ from PDB
  • Retrieve 1AYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AYJ from S2C, [Save to disk]
  • View 1AYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AYJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AYJ, from MSDmotif at EBI
  • Genome occurence of 1AYJ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ayj__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ayj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ayj_A] [1ayj]
  • SWISS-PROT database: [P69241]
  • Belongs to the plant defensin (plant defensin) family according to TCDB.
  • Domain organization of [DEF1_RAPSA] by SWISSPFAM
  • Domain found in 1AYJ: [Knot1 ] by SMART
  • Other resources with information on 1AYJ
  • Community annotation for 1AYJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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