1AYV Hydrolase date Nov 10, 1997
title Crystal Structure Of Cysteine Protease Human Cathepsin K In With A Covalent Thiazolhydrazide Inhibitor
authors B.Zhao, W.W.Smith, C.A.Janson, S.S.Abdel-Meguid
compound source
Molecule: Cathepsin K
Chain: A
Ec: 3.4.22.38
Engineered: Yes
Other_details: Inhibitor Covalently Bound To Active Site Cy
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Sf21
Cell: Osteoclast
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.310 51.270 103.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand IN6 BindingDB enzyme Hydrolase E.C.3.4.22.38 BRENDA
related structures by homologous chain: 1ATK, 1BGO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of potent and selective human cathepsin K inhibitors that span the active site., Thompson SK, Halbert SM, Bossard MJ, Tomaszek TA, Levy MA, Zhao B, Smith WW, Abdel-Meguid SS, Janson CA, D'Alessio KJ, McQueney MS, Amegadzie BY, Hanning CR, DesJarlais RL, Briand J, Sarkar SK, Huddleston MJ, Ijames CF, Carr SA, Garnes KT, Shu A, Heys JR, Bradbeer J, Zembryki D, Veber DF, et al., Proc Natl Acad Sci U S A 1997 Dec 23;94(26):14249-54. PMID:9405598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1ayv.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1AYV
  • CSU: Contacts of Structural Units for 1AYV
  • Likely Quarternary Molecular Structure file(s) for 1AYV
  • Retrieve 1AYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AYV from S2C, [Save to disk]
  • View 1AYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AYV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AYV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ayv__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ayv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ayv] [1ayv_A]
  • SWISS-PROT database: [P43235]
  • Domain organization of [CATK_HUMAN] by SWISSPFAM
  • Domain found in 1AYV: [Pept_C1 ] by SMART
  • Other resources with information on 1AYV
  • Community annotation for 1AYV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science