1B09 Immune System date Nov 18, 1998
title Human C-Reactive Protein Complexed With Phosphocholine
authors D.Thompson, M.B.Pepys, S.P.Wood
compound source
Molecule: Protein (C-Reactive Protein)
Chain: A, B, C, D, E
Synonym: Human Crp, Hcrp
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.196 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.940 193.940 134.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, PC enzyme
related structures by homologous chain: 1GNH
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceThe physiological structure of human C-reactive protein and its complex with phosphocholine., Thompson D, Pepys MB, Wood SP, Structure Fold Des 1999 Feb 15;7(2):169-77. PMID:10368284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (1b09.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 1B09
  • CSU: Contacts of Structural Units for 1B09
  • Likely Quarternary Molecular Structure file(s) for 1B09
  • Retrieve 1B09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B09 from S2C, [Save to disk]
  • View 1B09 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B09
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B09, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b09a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1b09b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1b09c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1b09d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1b09e_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1b09 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b09_B] [1b09_E] [1b09_D] [1b09_C] [1b09] [1b09_A]
  • SWISS-PROT database: [P02741]
  • Domain organization of [CRP_HUMAN] by SWISSPFAM
  • Domain found in 1B09: [PTX ] by SMART
  • Other resources with information on 1B09
  • Community annotation for 1B09 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1B09 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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