1B16 Oxidoreductase date Nov 25, 1998
title Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary C With Nad-3-Pentanone
authors J.Benach, S.Atrian, R.Gonzalez-Duarte, R.Ladenstein
compound source
Molecule: Protein (Alcohol Dehydrogenase)
Chain: A, B
Ec: 1.1.1.1
Other_details: Nad-3-Pentanone
 Organism_scientific: Scaptodrosophila Lebanonensis
Organism_taxid: 7225
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.800 53.000 70.500 90.00 107.20 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand NAQ enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1B2L, 1SBY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe catalytic reaction and inhibition mechanism of Drosophila alcohol dehydrogenase: observation of an enzyme-bound NAD-ketone adduct at 1.4 A resolution by X-ray crystallography., Benach J, Atrian S, Gonzalez-Duarte R, Ladenstein R, J Mol Biol 1999 Jun 4;289(2):335-55. PMID:10366509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1b16.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1B16
  • CSU: Contacts of Structural Units for 1B16
  • Likely Quarternary Molecular Structure file(s) for 1B16
  • Retrieve 1B16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B16 from S2C, [Save to disk]
    • View 1B16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B16
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1B16 1B16A 1B16B from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B16, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b16a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1b16b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b16] [1b16_B] [1b16_A]
  • SWISS-PROT database: [P10807]
  • Domain organization of [ADH_DROLE] by SWISSPFAM
    • Other resources with information on 1B16
  • Community annotation for 1B16 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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