1B2J Electron Transport date Nov 27, 1998
title Clostridium Pasteurianum Rubredoxin G43a Mutant
authors M.J.Maher, J.M.Guss, M.C.J.Wilce, A.G.Wedd
compound source
Molecule: Protein (Rubredoxin)
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Strain: Jm109
Cellular_location: Cytoplasm
Gene: Clorub
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
Expression_system_gene: Clorub
symmetry Space Group: H 3
R_factor 0.183 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.380 64.380 32.850 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand FE enzyme
related structures by homologous chain: 1C09, 1IU6
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceRubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert., Maher MJ, Xiao Z, Wilce MC, Guss JM, Wedd AG, Acta Crystallogr D Biol Crystallogr 1999 May;55(5):962-8. PMID:10216292
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1b2j.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1B2J
  • CSU: Contacts of Structural Units for 1B2J
  • Likely Quarternary Molecular Structure file(s) for 1B2J
  • Retrieve 1B2J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B2J from S2C, [Save to disk]
  • View 1B2J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 1B2J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B2J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b2ja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b2j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b2j] [1b2j_A]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
  • Other resources with information on 1B2J
  • Community annotation for 1B2J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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