1B2T Chemokine date Dec 01, 1998
title Solution Structure Of The Cx3c Chemokine Domain Of Fractalkine
authors T.M.Handel, L.S.Mizoue, J.F.Bazan, E.C.Johnson
compound source
Molecule: Protein (Fractalkine)
Chain: A
Fragment: Chemokine Domain
Engineered: Yes
Other_details: Disulfide Between 8 And 34 And 12 And 50
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: Plyss
Expression_system_cellular_location: Cytoplasm
methodSolution NMR
related structures by homologous chain: 1F2L
Primary referenceSolution structure and dynamics of the CX3C chemokine domain of fractalkine and its interaction with an N-terminal fragment of CX3CR1., Mizoue LS, Bazan JF, Johnson EC, Handel TM, Biochemistry 1999 Feb 2;38(5):1402-14. PMID:9931005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (415 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1B2T
  • Original NMR restraints for 1B2T from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1B2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B2T from S2C, [Save to disk]
  • View 1B2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B2T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B2T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b2ta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b2t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b2t_A] [1b2t]
  • SWISS-PROT database: [P78423]
  • Domain organization of [X3CL1_HUMAN] by SWISSPFAM
  • Domain found in 1B2T: [SCY ] by SMART
  • Other resources with information on 1B2T
  • Community annotation for 1B2T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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