1B38 Transferase date Dec 17, 1998
title Human Cyclin-Dependent Kinase 2
authors N.R.Brown, M.E.M.Noble, A.M.Lawrie, M.C.Morris, P.Tunnah, G.Divita, L.N.Johnson, J.A.Endicott
compound source
Molecule: Protein (Cell Division Protein Kinase 2)
Chain: A
Fragment: Intact
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_plasmid: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.333 71.122 72.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACE, ATP, MG enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1KE8, 1PXO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffects of phosphorylation of threonine 160 on cyclin-dependent kinase 2 structure and activity., Brown NR, Noble ME, Lawrie AM, Morris MC, Tunnah P, Divita G, Johnson LN, Endicott JA, J Biol Chem 1999 Mar 26;274(13):8746-56. PMID:10085115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1b38.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1B38
  • CSU: Contacts of Structural Units for 1B38
  • Likely Quarternary Molecular Structure file(s) for 1B38
  • Structure Factors (139 Kb)
  • Retrieve 1B38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B38 from S2C, [Save to disk]
  • Re-refined 1b38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1B38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B38
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B38, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b38a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b38 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b38] [1b38_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1B38: [S_TKc ] by SMART
  • Other resources with information on 1B38
  • Community annotation for 1B38 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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