1B92 Transferase date Feb 19, 1999
title Mobility Of An Hiv-1 Integrase Active Site Loop Is Correlate Catalytic Activity
authors J.Greenwald, V.Le, S.L.Butler, F.D.Bushman, S.Choe
compound source
Molecule: Protein (Integrase)
Chain: A
Fragment: Catalytic Core Domain
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus
Organism_taxid: 11676
Strain: 1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_cellular_location: Cytoplasm
Expression_system_vector: Pet28
symmetry Space Group: P 31 2 1
R_factor 0.225 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.260 72.260 65.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.02 Å
ligand CAC, SO4 enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1BL3, 1QS4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe mobility of an HIV-1 integrase active site loop is correlated with catalytic activity., Greenwald J, Le V, Butler SL, Bushman FD, Choe S, Biochemistry 1999 Jul 13;38(28):8892-8. PMID:10413462
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1b92.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1b92.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1B92
  • CSU: Contacts of Structural Units for 1B92
  • Likely Quarternary Molecular Structure file(s) for 1B92
  • Retrieve 1B92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B92 from S2C, [Save to disk]
  • View 1B92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B92, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b92a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b92] [1b92_A]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 1B92
  • Community annotation for 1B92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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