1BAZ Transcription Regulation date Apr 21, 1998
title Arc Repressor Mutant Phe10val
authors J.F.Schildbach, B.E.Raumann, R.T.Sauer
compound source
Molecule: Arc Repressor
Chain: A, B, C, D
Synonym: Regulatory Protein Arc
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage P22
Organism_taxid: 10754
Gene: Arc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ua2f
Expression_system_plasmid: Pta200-Fv10
Expression_system_gene: Arc
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.900 52.570 47.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1U9P
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceOrigins of DNA-binding specificity: role of protein contacts with the DNA backbone., Schildbach JF, Karzai AW, Raumann BE, Sauer RT, Proc Natl Acad Sci U S A 1999 Feb 2;96(3):811-7. PMID:9927650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1baz.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1BAZ
  • Likely Quarternary Molecular Structure file(s) for 1BAZ
  • Retrieve 1BAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BAZ from S2C, [Save to disk]
  • View 1BAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BAZ, from MSDmotif at EBI
  • Genome occurence of 1BAZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1baza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bazb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bazc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bazd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1baz_B] [1baz_D] [1baz_A] [1baz_C] [1baz]
  • SWISS-PROT database: [P03050]
  • Domain organization of [RARC_BPP22] by SWISSPFAM
  • Other resources with information on 1BAZ
  • Community annotation for 1BAZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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