1BBR Serine Protease date Apr 27, 1992
title The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution
authors P.Martin, B.Edwards
compound source
Molecule: Epsilon-Thrombin
Chain: L, J, M
Ec: 3.4.21.5
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Epsilon-Thrombin
Chain: H
Ec: 3.4.21.5
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Epsilon-Thrombin
Chain: E
Ec: 3.4.21.5
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Fibrinogen Alphaalpha-E Chain Precursor
Chain: F, G, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Epsilon-Thrombin
Chain: K, N
Ec: 3.4.21.5
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.020 89.410 99.300 90.00 106.64 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACE enzyme Hydrolase E.C.3.4.21.5 BRENDA
related structures by homologous chain: 1D9I, 1TBZ, 4HTC
Gene
Ontology
ChainFunctionProcessComponent
E


H, N, K


J, M, L


Primary referenceThe structure of residues 7-16 of the A alpha-chain of human fibrinogen bound to bovine thrombin at 2.3-A resolution., Martin PD, Robertson W, Turk D, Huber R, Bode W, Edwards BF, J Biol Chem 1992 Apr 15;267(11):7911-20. PMID:1560020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (1bbr.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (1bbr.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (1bbr.pdb3.gz) 56 Kb
  • Biological Unit Coordinates (1bbr.pdb4.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1BBR
  • CSU: Contacts of Structural Units for 1BBR
  • Likely Quarternary Molecular Structure file(s) for 1BBR
  • Retrieve 1BBR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BBR from S2C, [Save to disk]
  • View 1BBR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BBR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BBR, from MSDmotif at EBI
  • Genome occurence of 1BBR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bbr.2, region J:,K [Jmol] [rasmolscript] [script source]
        - Domain d1bbr.1, region L:,H:,E [Jmol] [rasmolscript] [script source]
        - Domain d1bbr.3, region M:,N [Jmol] [rasmolscript] [script source]
  • Fold representative 1bbr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bbr_F] [1bbr_N] [1bbr_M] [1bbr_I] [1bbr_H] [1bbr] [1bbr_J] [1bbr_E] [1bbr_K] [1bbr_G] [1bbr_L]
  • SWISS-PROT database: [P02671] [P00735]
  • Domain organization of [FIBA_HUMAN] [THRB_BOVIN] by SWISSPFAM
  • Domain found in 1BBR: [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1BBR with the sequences similar proteins can be viewed for 1BBR's classification [FIBA_HUMAN] [THRB_BOVIN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FIBA_HUMAN] [THRB_BOVIN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BBR
  • Community annotation for 1BBR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BBR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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