1BBZ Complex (Transferase Peptide) date Apr 28, 1998
title Crystal Structure Of The Abl-Sh3 Domain Complexed With A Des High-Affinity Peptide Ligand: Implications For Sh3-Ligand Interactions
authors M.T.Pisabarro, L.Serrano, M.Wilmanns
compound source
Molecule: Abl Tyrosine Kinase
Chain: A, C, E, G
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide P41
Chain: B, D, F, H
Engineered: Yes
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.680 73.790 80.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceCrystal structure of the abl-SH3 domain complexed with a designed high-affinity peptide ligand: implications for SH3-ligand interactions., Pisabarro MT, Serrano L, Wilmanns M, J Mol Biol 1998 Aug 21;281(3):513-21. PMID:9698566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1bbz.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (1bbz.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (1bbz.pdb3.gz) 14 Kb
  • Biological Unit Coordinates (1bbz.pdb4.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1BBZ
  • CSU: Contacts of Structural Units for 1BBZ
  • Likely Quarternary Molecular Structure file(s) for 1BBZ
  • Structure Factors (308 Kb)
  • Retrieve 1BBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BBZ from S2C, [Save to disk]
    • View 1BBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BBZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BBZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bbza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bbzc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bbze_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1bbzg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bbz] [1bbz_D] [1bbz_F] [1bbz_A] [1bbz_B] [1bbz_H] [1bbz_G] [1bbz_C] [1bbz_E]
  • SWISS-PROT database: [P00519]
  • Domain organization of [ABL1_HUMAN] by SWISSPFAM
  • Domain found in 1BBZ: [SH3 ] by SMART
    • Other resources with information on 1BBZ
  • Community annotation for 1BBZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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