1BC0 Calcium-Binding Protein date May 04, 1998
title Recombinant Rat Annexin V, W185a Mutant
authors Y.D.Mo, M.A.Swairjo, C.W.Li, J.F.Head, B.A.Seaton
compound source
Molecule: Annexin V
Chain: A
Synonym: Placental Anticoagulant Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2
symmetry Space Group: H 3
R_factor 0.226 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.300 157.300 37.010 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, SO4 enzyme
related structures by homologous chain: 1BC1, 1HVD
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium-transporting ATPase ...


  • Primary referenceMutational and crystallographic analyses of interfacial residues in annexin V suggest direct interactions with phospholipid membrane components., Campos B, Mo YD, Mealy TR, Li CW, Swairjo MA, Balch C, Head JF, Retzinger G, Dedman JR, Seaton BA, Biochemistry 1998 Jun 2;37(22):8004-10. PMID:9609693
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1bc0.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1BC0
  • CSU: Contacts of Structural Units for 1BC0
  • Likely Quarternary Molecular Structure file(s) for 1BC0
  • Structure Factors (111 Kb)
  • Retrieve 1BC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BC0 from S2C, [Save to disk]
  • Re-refined 1bc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BC0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bc0__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bc0_A] [1bc0]
  • SWISS-PROT database: [P14668]
  • Domain organization of [ANXA5_RAT] by SWISSPFAM
  • Domain found in 1BC0: [ANX ] by SMART
  • Other resources with information on 1BC0
  • Community annotation for 1BC0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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