1BCC Oxidoreductase date Mar 23, 1998
title Cytochrome Bc1 Complex From Chicken
authors Z.Zhang, L.Huang, V.M.Shulmeister, Y.I.Chi, K.K.Kim, L.W.Hung, A.R.Crofts, E.A.Berry, S.H.Kim
compound source
Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: A
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: B
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: C
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: D
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: E
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: F
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: G
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: H
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: I
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue

Molecule: Ubiquinol Cytochrome C Oxidoreductase
Chain: J
Synonym: Cytochrome Bc1 Complex, Complex III
Ec: 1.10.2.2
Other_details: Model Includes Ubiquinone And Phospholipids

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Heart
Tissue: Muscle
Organelle: Mitochondria
Cellular_location: Mitochondrial Inner Membrane
Other_details: Isolated From Natural Heart Muscle Tissue
symmetry Space Group: P 21 21 21
R_factor 0.270 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.590 182.518 240.573 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.16 Å
ligand BOG, FES, HEM, PEE, U10 enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


J


Primary referenceElectron transfer by domain movement in cytochrome bc1., Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH, Nature 1998 Apr 16;392(6677):677-84. PMID:9565029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (1bcc.pdb1.gz) 610 Kb
  • LPC: Ligand-Protein Contacts for 1BCC
  • CSU: Contacts of Structural Units for 1BCC
  • Likely Quarternary Molecular Structure file(s) for 1BCC
  • Structure Factors (1230 Kb)
  • Retrieve 1BCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BCC from S2C, [Save to disk]
  • Re-refined 1bcc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BCC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BCC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bcca2, region A:233-445 [Jmol] [rasmolscript] [script source]
        - Domain d1bcca1, region A:4-232 [Jmol] [rasmolscript] [script source]
        - Domain d1bccb1, region B:18-235 [Jmol] [rasmolscript] [script source]
        - Domain d1bccb2, region B:236-439 [Jmol] [rasmolscript] [script source]
        - Domain d1bccc3, region C:2-261 [Jmol] [rasmolscript] [script source]
        - Domain d1bccc2, region C:262-380 [Jmol] [rasmolscript] [script source]
        - Domain d1bccd2, region D:1-195 [Jmol] [rasmolscript] [script source]
        - Domain d1bccd3, region D:196-241 [Jmol] [rasmolscript] [script source]
        - Domain d1bcce2, region E:1-69 [Jmol] [rasmolscript] [script source]
        - Domain d1bcce1, region E:70-196 [Jmol] [rasmolscript] [script source]
        - Domain d1bccf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1bccg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1bcch_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1bccj_, region J [Jmol] [rasmolscript] [script source]
  • Fold representative 1bcc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bcc_D] [1bcc_G] [1bcc_B] [1bcc_J] [1bcc_A] [1bcc] [1bcc_F] [1bcc_E] [1bcc_H] [1bcc_I] [1bcc_C]
  • SWISS-PROT database: [P00125] [P18946] [P31800] [P23004] [P00126] [P00129] [P13271] [P00130] [P13272]
  • Belongs to the proton-translocating quinol:cytochrome c reductase (qcr) superfamily according to TCDB.
  • Domain organization of [CY1_BOVIN] [CYB_CHICK] [QCR1_BOVIN] [QCR2_BOVIN] [QCR6_BOVIN] [QCR7_BOVIN] [QCR8_BOVIN] [QCR9_BOVIN] [UCRI_BOVIN] by SWISSPFAM
  • Other resources with information on 1BCC
  • Community annotation for 1BCC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BCC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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