1BD9	Lipid Binding Protein	date	May 12, 1998
title	Human Phosphatidylethanolamine Binding Protein
authors	M.J.Banfield, J.J.Barker, A.C.F.Perry, R.L.Brady
compound		source
Molecule: Phosphatidylethanolamine Binding Protein Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Cytoplasm, Membrane-Associated Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_cellular_location: Cytoplasm Expression_system_vector: Plasmid Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 1 21 1	R_factor 0.171 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.420 60.740 67.640 90.00 102.42 90.00
method	X-Ray Diffraction	resolution	2.05 Å
related structures	by homologous chain: 1A44, 1B7A
Gene Ontology	Chain Function Process Component A, B serine-type endopeptidase in...
Primary reference	Function from structure? The crystal structure of human phosphatidylethanolamine-binding protein suggests a role in membrane signal transduction., Banfield MJ, Barker JJ, Perry AC, Brady RL, Structure 1998 Oct 15;6(10):1245-54. PMID:9782050

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (1bd9.pdb1.gz) 65 Kb CSU: Contacts of Structural Units for 1BD9 Likely Quarternary Molecular Structure file(s) for 1BD9 Structure Factors (203 Kb) Retrieve 1BD9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BD9 from S2C, [Save to disk] Re-refined 1bd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BD9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BD9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BD9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bd9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1bd9b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bd9_A] [1bd9] [1bd9_B] SWISS-PROT database: [P30086] Domain organization of [PEBP1_HUMAN] by SWISSPFAM

Other resources with information on 1BD9

Community annotation for 1BD9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---