1BDE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand ACE, NH2 enzyme
related structures by homologous chain: 1M8L, 1X9V
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of peptides from HIV-1 Vpr protein that cause membrane permeabilization and growth arrest., Yao S, Torres AM, Azad AA, Macreadie IG, Norton RS, J Pept Sci 1998 Nov;4(7):426-35. PMID:9851370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (1bde.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1BDE
  • CSU: Contacts of Structural Units for 1BDE
  • Original NMR restraints for 1BDE from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BDE from S2C, [Save to disk]
  • View 1BDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bde] [1bde_A]
  • SWISS-PROT database: [P12520]
  • Belongs to the hiv viral protein r (vpr) family according to TCDB.

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