1BDK AN NMR, CD, MOLECULAR DYNAMICS, AND FLUOROMETRIC STUDY OF THE CONFORMATION OF THE BRADYKININ ANTAGONIST B-9340 IN WATER AND IN AQUEOUS MICELLAR SOLUTIONS date
authors Sejbal, J., Kotovych, G., Cann, J.R., Stewart, J.M., Gera, L.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DAR, HYP, IGL, OIC, TIH enzyme
Primary referenceAn NMR, CD, molecular dynamics, and fluorometric study of the conformation of the bradykinin antagonist B-9340 in water and in aqueous micellar solutions., Sejbal J, Cann JR, Stewart JM, Gera L, Kotovych G, J Med Chem 1996 Mar 15;39(6):1281-92. PMID:8632435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (1bdk.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1BDK
  • CSU: Contacts of Structural Units for 1BDK
  • Retrieve 1BDK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BDK from S2C, [Save to disk]
    • View 1BDK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BDK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BDK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bdk__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bdk_A] [1bdk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1BDK
  • Community annotation for 1BDK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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