1BDN CRYSTAL LATTICE PACKING IS IMPORTANT IN DETERMINING THE BEND OF A DNA DODECAMER CONTAINING AN ADENINE TRACT date
authors DiGabriele, A.D., Sanderson, M.R., Steitz, T.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MG enzyme
Primary referenceCrystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract., DiGabriele AD, Sanderson MR, Steitz TA, Proc Natl Acad Sci U S A 1989 Mar;86(6):1816-20. PMID:2928304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1bdn.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (1bdn.pdb2.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1BDN
  • CSU: Contacts of Structural Units for 1BDN
  • Likely Quarternary Molecular Structure file(s) for 1BDN
  • Retrieve 1BDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BDN from S2C, [Save to disk]
  • View 1BDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BDN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BDN, from MSDmotif at EBI
  • Fold representative 1bdn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bdn_C] [1bdn] [1bdn_A] [1bdn_B] [1bdn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1BDN
  • Community annotation for 1BDN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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