1BE7 Electron Transport date May 20, 1998
title Clostridium Pasteurianum Rubredoxin C42s Mutant
authors M.Maher, J.M.Guss, M.Wilce, A.G.Wedd
compound source
Molecule: Rubredoxin
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Cellular_location: Cytoplasm
Gene: Clorub
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
Expression_system_gene: Clorub
symmetry Space Group: H 3
R_factor 0.171 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
64.520 64.520 32.570 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand FE enzyme
related structures by homologous chain: 1IU6, 1R0H
  • electron transfer activity

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1be7.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1BE7
  • CSU: Contacts of Structural Units for 1BE7
  • Likely Quarternary Molecular Structure file(s) for 1BE7
  • Structure Factors (43 Kb)
  • Retrieve 1BE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BE7 from S2C, [Save to disk]
  • Re-refined 1be7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BE7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BE7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1be7__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1be7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1be7_A] [1be7]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
  • Other resources with information on 1BE7
  • Community annotation for 1BE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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