1BF9 Blood Coagulation date May 28, 1998
title N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23 Structures
authors A.Muranyi, B.E.Finn, G.P.Gippert, S.Forsen, J.Stenflo, T.Drakenberg
compound source
Molecule: Factor Vii
Chain: A
Fragment: N-Terminal Egf-Like Domain
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1IXA
Primary referenceSolution structure of the N-terminal EGF-like domain from human factor VII., Muranyi A, Finn BE, Gippert GP, Forsen S, Stenflo J, Drakenberg T, Biochemistry 1998 Jul 28;37(30):10605-15. PMID:9692950
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1BF9
  • Original NMR restraints for 1BF9 from PDB
  • Retrieve 1BF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BF9 from S2C, [Save to disk]
  • View 1BF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BF9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BF9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bf9__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bf9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bf9_A] [1bf9]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domain found in 1BF9: [EGF_CA ] by SMART
  • Other resources with information on 1BF9
  • Community annotation for 1BF9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BF9 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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