1BGD Cytokine date Apr 27, 1993
title Crystal Structure Of Canine And Bovine Granulocyte-Colony Stimulating Factor (G-Csf)
authors B.Lovejoy, D.Cascio, D.Eisenberg
compound source
Molecule: Granulocyte Colony-Stimulating Factor
Chain: A
Engineered: Yes
Organism_scientific: Canis Lupus Familiaris
Organism_common: Dog
Organism_taxid: 9615
Strain: Familiaris
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
99.200 36.200 48.600 90.00 96.40 90.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1CD9, 1RHG
  • cytokine activity
  • growth factor activity

  • Primary referenceCrystal structure of canine and bovine granulocyte-colony stimulating factor (G-CSF)., Lovejoy B, Cascio D, Eisenberg D, J Mol Biol 1993 Dec 5;234(3):640-53. PMID:7504736
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1bgd.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1BGD
  • Likely Quarternary Molecular Structure file(s) for 1BGD
  • Structure Factors (63 Kb)
  • Retrieve 1BGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BGD from S2C, [Save to disk]
  • Re-refined 1bgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BGD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BGD, from MSDmotif at EBI
  • Genome occurence of 1BGD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bgd__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bgd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bgd] [1bgd_A]
  • SWISS-PROT database: [P35834]
  • Domain organization of [CSF3_CANFA] by SWISSPFAM
  • Domain found in 1BGD: [IL6 ] by SMART
  • Other resources with information on 1BGD
  • Community annotation for 1BGD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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