OCA Atlas for 1BHI

1BHI

Dna-Binding Regulatory Protein

date

Jun 09, 1998

title

Structure Of Transactivation Domain Of Cre-Bp1atf-2, Nmr, 2 Structures

authors

A.Nagadoi, K.Nakazawa, H.Uda, T.Maekawa, S.Ishii, Y.Nishimura

compound

source

Molecule: Cre-Bp1
Chain: A
Fragment: Zinc Finger-Like Subdomain Of The Transactivation
Synonym: Atf-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdna
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Par2156nco1

method

Solution NMR

note

1BHI is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain., Nagadoi A, Nakazawa K, Uda H, Okuno K, Maekawa T, Ishii S, Nishimura Y, J Mol Biol 1999 Apr 2;287(3):593-607. PMID:10092462

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]

Biological Unit Coordinates (1bhi.pdb1.gz) 12 Kb

CSU: Contacts of Structural Units for 1BHI

Original NMR restraints for 1BHI from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1BHI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1BHI from S2C, [Save to disk]

View 1BHI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BHI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1BHI, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1bhi__, region [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bhi] [1bhi_A]

SWISS-PROT database: [P15336]

Domain organization of [ATF2_HUMAN] by SWISSPFAM

Domain found in 1BHI: [ZnF_C2H2 ] by SMART

Other resources with information on 1BHI

Community annotation for 1BHI at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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