1BHI Dna-Binding Regulatory Protein date Jun 09, 1998
title Structure Of Transactivation Domain Of Cre-Bp1atf-2, Nmr, 20 Structures
authors A.Nagadoi, K.Nakazawa, H.Uda, T.Maekawa, S.Ishii, Y.Nishimura
compound source
Molecule: Cre-Bp1
Chain: A
Fragment: Zinc Finger-Like Subdomain Of The Transactivation Domain;
Synonym: Atf-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdna
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Par2156nco1
methodSolution NMR
note 1BHI is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain., Nagadoi A, Nakazawa K, Uda H, Okuno K, Maekawa T, Ishii S, Nishimura Y, J Mol Biol 1999 Apr 2;287(3):593-607. PMID:10092462
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1BHI
  • Original NMR restraints for 1BHI from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BHI from S2C, [Save to disk]
  • View 1BHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BHI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BHI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bhi__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bhi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bhi] [1bhi_A]
  • SWISS-PROT database: [P15336]
  • Domain organization of [ATF2_HUMAN] by SWISSPFAM
  • Domain found in 1BHI: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1BHI
  • Community annotation for 1BHI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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