1BHT Heparin-Binding Domain date Jun 10, 1998
title Nk1 Fragment Of Human Hepatocyte Growth Factor
authors M.H.Ultsch, N.A.Lokker, P.J.Godowski, A.M.De Vos
compound source
Molecule: Hepatocyte Growth Factor
Chain: A, B
Fragment: Nk1 Fragment, Heparin Binding Domain Plus C-Met Binding Domain;
Synonym: Nk1
Engineered: Yes
Other_details: Hepes Buffer Molecule Bound In Kringle Binding Pocket
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 27c7
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pf-Nk1
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.320 88.320 117.284 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EPE, SO4 enzyme
related structures by homologous chain: 1GMN
Primary referenceCrystal structure of the NK1 fragment of human hepatocyte growth factor at 2.0 A resolution., Ultsch M, Lokker NA, Godowski PJ, de Vos AM, Structure 1998 Nov 15;6(11):1383-93. PMID:9817840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1bht.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 1BHT
  • CSU: Contacts of Structural Units for 1BHT
  • Likely Quarternary Molecular Structure file(s) for 1BHT
  • Retrieve 1BHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BHT from S2C, [Save to disk]
  • View 1BHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BHT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BHT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bhta2, region A:127-210 [Jmol] [rasmolscript] [script source]
        - Domain d1bhta1, region A:35-126 [Jmol] [rasmolscript] [script source]
        - Domain d1bhtb1, region B:336-426 [Jmol] [rasmolscript] [script source]
        - Domain d1bhtb2, region B:427-509 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bht from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bht_A] [1bht] [1bht_B]
  • SWISS-PROT database: [P14210]
  • Domain organization of [HGF_HUMAN] by SWISSPFAM
  • Domains found in 1BHT: [KR] [PAN_AP ] by SMART
  • Other resources with information on 1BHT
  • Community annotation for 1BHT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BHT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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