1BIO Serine Protease date Jun 18, 1998
title Human Complement Factor D In Complex With Isatoic Anhydride
authors H.Jing, Y.S.Babu, D.Moore, J.M.Kilpatrick, X.Y.Liu, J.E.Volanaki S.V.L.Narayana
compound source
Molecule: Complement Factor D
Chain: A
Ec: 3.4.21.46
Other_details: Isatoic Anhydride Acylates Active Site Ser 1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.480 49.910 39.430 90.00 105.69 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, SOA enzyme Hydrolase E.C.3.4.21.46 BRENDA
related structures by homologous chain: 1DIC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity., Jing H, Babu YS, Moore D, Kilpatrick JM, Liu XY, Volanakis JE, Narayana SV, J Mol Biol 1998 Oct 9;282(5):1061-81. PMID:9753554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1bio.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1BIO
  • CSU: Contacts of Structural Units for 1BIO
  • Likely Quarternary Molecular Structure file(s) for 1BIO
  • Structure Factors (210 Kb)
  • Retrieve 1BIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BIO from S2C, [Save to disk]
  • Re-refined 1bio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BIO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1BIO from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BIO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bio__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bio from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bio_A] [1bio]
  • SWISS-PROT database: [P00746]
  • Domain organization of [CFAD_HUMAN] by SWISSPFAM
  • Domain found in 1BIO: [Tryp_SPc ] by SMART
  • Other resources with information on 1BIO
  • Community annotation for 1BIO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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