1BJ5	Plasma Protein	date	Jul 02, 1998
title	Human Serum Albumin Complexed With Myristic Acid
authors	S.Curry, H.Mandelkow, P.Brick, N.Franks
compound		source
Molecule: Human Serum Albumin Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Plasma Cellular_location: Serum Gene: Alb Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 189.180 38.960 96.400 90.00 105.31 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MYR	enzyme
related structures	by homologous chain: 1E7E, 1E7G
Gene Ontology	Chain Function Process Component A DNA binding fatty acid binding copper ion binding protein binding drug binding zinc ion binding lipid binding toxic substance binding antioxidant activity oxygen binding enzyme binding pyridoxal phosphate binding cell surface binding metal ion binding chaperone binding platelet degranulation lipid metabolic process transport response to stress response to nutrient blood coagulation bile acid metabolic process cellular response to starvat... response to organic substanc... bile acid and bile salt tran... hemolysis by symbiont of hos... platelet activation lipoprotein metabolic proces... negative regulation of apopt... negative regulation of progr... sodium-independent organic a... small molecule metabolic pro... positive regulation of circa... response to mercury ion maintenance of mitochondrion... transmembrane transport response to platinum ion extracellular region basement membrane extracellular space cytoplasm platelet alpha granule lumen... protein complex extracellular vesicular exos...
Primary reference	Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites., Curry S, Mandelkow H, Brick P, Franks N, Nat Struct Biol 1998 Sep;5(9):827-35. PMID:9731778

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (1bj5.pdb1.gz) 92 Kb LPC: Ligand-Protein Contacts for 1BJ5 CSU: Contacts of Structural Units for 1BJ5 Likely Quarternary Molecular Structure file(s) for 1BJ5 Structure Factors (156 Kb) Retrieve 1BJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BJ5 from S2C, [Save to disk] Re-refined 1bj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1BJ5

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1BJ5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bj5_2, region 197-388 [Jmol] [rasmolscript] [script source]     - Domain d1bj5_1, region 3-196 [Jmol] [rasmolscript] [script source]     - Domain d1bj5_3, region 389-584 [Jmol] [rasmolscript] [script source] Fold representative 1bj5 from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bj5_A] SWISS-PROT database: [P02768] Domain organization of [ALBU_HUMAN] by SWISSPFAM Domain found in 1BJ5: [ALBUMIN ] by SMART Alignments of the sequence of 1BJ5 with the sequences similar proteins can be viewed for 1BJ5's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1BJ5

Community annotation for 1BJ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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