1BJ5 Plasma Protein date Jul 02, 1998
title Human Serum Albumin Complexed With Myristic Acid
authors S.Curry, H.Mandelkow, P.Brick, N.Franks
compound source
Molecule: Human Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Plasma
Cellular_location: Serum
Gene: Alb
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.180 38.960 96.400 90.00 105.31 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MYR enzyme
related structures by homologous chain: 1E7E, 1E7G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites., Curry S, Mandelkow H, Brick P, Franks N, Nat Struct Biol 1998 Sep;5(9):827-35. PMID:9731778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1bj5.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1BJ5
  • CSU: Contacts of Structural Units for 1BJ5
  • Likely Quarternary Molecular Structure file(s) for 1BJ5
  • Structure Factors (162 Kb)
  • Retrieve 1BJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJ5 from S2C, [Save to disk]
  • Re-refined 1bj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bj5_2, region 197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1bj5_1, region 3-196 [Jmol] [rasmolscript] [script source]
        - Domain d1bj5_3, region 389-584 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bj5] [1bj5_A]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1BJ5: [ALBUMIN ] by SMART
  • Alignments of the sequence of 1BJ5 with the sequences similar proteins can be viewed for 1BJ5's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BJ5
  • Community annotation for 1BJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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