1BJC Glycoprotein date Jun 23, 1998
title Solution Nmr Structure Of Amyloid Beta[F16], Residues 1-28, 15 Structures
authors S.A.Poulsen, A.A.Watson, D.J.Craik
compound source
Molecule: Amyloid Beta-Peptide
Chain: A
Fragment: Abeta [F16], Residues 1-28
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Unidentified
Expression_system_taxid: 32644
methodSolution NMR
note 1BJC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structures in aqueous SDS micelles of two amyloid beta peptides of A beta(1-28) mutated at the alpha-secretase cleavage site (K16E, K16F)., Poulsen SA, Watson AA, Fairlie DP, Craik DJ, J Struct Biol 2000 Jun;130(2-3):142-52. PMID:10940222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1BJC
  • Original NMR restraints for 1BJC from PDB
  • Retrieve 1BJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJC from S2C, [Save to disk]
  • View 1BJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BJC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BJC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bjc__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bjc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bjc] [1bjc_A]
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1BJC with the sequences similar proteins can be viewed for 1BJC's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BJC
  • Community annotation for 1BJC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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