1BJI Neuraminidase date Dec 03, 1997
title The X-Ray Structure Of A Complex Of Tern N9 Influenza Virus Neuraminidase Complexed With The Glaxo 6-Carboxamide Sialic Analogue Gr217029
authors J.N.Varghese
compound source
Molecule: Neuraminidase
Chain: A
Fragment: Residues 82 - 468
Synonym: Sialidase
Ec: 3.2.1.18
Other_details: Integral Membrane Protein, Membrane Bound St Cleaved By Pronase, Releasing Fully Active Head With Residu 468
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Aternaustraliag70c75
Other_details: Detergent Released, Pronase Digested
symmetry Space Group: I 4 3 2
R_factor 0.155 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.800 182.800 182.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BMA, CA, DPC, MAN, NAG enzyme Hydrolase E.C.3.2.1.18 BRENDA
related structures by homologous chain: 2QWD, 7NN9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDihydropyrancarboxamides related to zanamivir: a new series of inhibitors of influenza virus sialidases. 2. Crystallographic and molecular modeling study of complexes of 4-amino-4H-pyran-6-carboxamides and sialidase from influenza virus types A and B., Taylor NR, Cleasby A, Singh O, Skarzynski T, Wonacott AJ, Smith PW, Sollis SL, Howes PD, Cherry PC, Bethell R, Colman P, Varghese J, J Med Chem 1998 Mar 12;41(6):798-807. PMID:9526556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1bji.pdb1.gz) 264 Kb
  • LPC: Ligand-Protein Contacts for 1BJI
  • CSU: Contacts of Structural Units for 1BJI
  • Likely Quarternary Molecular Structure file(s) for 1BJI
  • Retrieve 1BJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJI from S2C, [Save to disk]
  • View 1BJI in 3D
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  • Visual 3D analysis of 1BJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJI, from MSDmotif at EBI
  • Genome occurence of 1BJI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bji__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bji] [1bji_A]
  • SWISS-PROT database: [P03472]
  • Domain organization of [NRAM_I75A5] by SWISSPFAM
  • Other resources with information on 1BJI
  • Community annotation for 1BJI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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