1BKE Plasma Protein date Jul 06, 1998
title Human Serum Albumin In A Complex With Myristic Acid And Tri- Iodobenzoic Acid
authors S.Curry, H.Mandelkow, P.Brick, N.Franks
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Plasma
Cellular_location: Plasma
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.650 38.870 95.910 90.00 105.49 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand B3I, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites., Curry S, Mandelkow H, Brick P, Franks N, Nat Struct Biol 1998 Sep;5(9):827-35. PMID:9731778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1bke.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 1BKE
  • CSU: Contacts of Structural Units for 1BKE
  • Likely Quarternary Molecular Structure file(s) for 1BKE
  • Structure Factors (86 Kb)
  • Retrieve 1BKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BKE from S2C, [Save to disk]
  • Re-refined 1bke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BKE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BKE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bke_2, region 197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1bke_3, region 389-584 [Jmol] [rasmolscript] [script source]
        - Domain d1bke_1, region 4-196 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bke from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bke_A] [1bke]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1BKE: [ALBUMIN ] by SMART
  • Other resources with information on 1BKE
  • Community annotation for 1BKE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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