1BLN ANTI-P-GLYCOPROTEIN FAB MRK-16 date
authors Vasudevan, S., Tsuruo, T., Rose, D.R.
compound source
symmetry
R_factor
R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
note 1BLN (Molecule of the Month:pdb123)
related structures by homologous chain: 1AI1, 1IGT, 1MHP, 1TY3
Primary referenceMode of binding of anti-P-glycoprotein antibody MRK-16 to its antigen. A crystallographic and molecular modeling study., Vasudevan S, Tsuruo T, Rose DR, J Biol Chem 1998 Sep 25;273(39):25413-9. PMID:9738009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1bln.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1bln.pdb2.gz) 68 Kb
  • CSU: Contacts of Structural Units for 1BLN
  • Likely Quarternary Molecular Structure file(s) for 1BLN
  • Retrieve 1BLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BLN from S2C, [Save to disk]
  • View 1BLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BLN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BLN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1blna1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1blna2, region A:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1blnb1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1blnb2, region B:114-227 [Jmol] [rasmolscript] [script source]
        - Domain d1blnc1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1blnc2, region C:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1blnd1, region D:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1blnd2, region D:114-227 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bln] [1bln_C] [1bln_D] [1bln_A] [1bln_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1BLN: [IG_like] [IGv ] by SMART
  • Other resources with information on 1BLN
  • Community annotation for 1BLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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