1BMK Transferase date Jul 23, 1998
title The Complex Structure Of The Map Kinase P38sb218655
authors Z.Wang, B.Canagarajah, J.C.Boehm, S.Kassis, M.H.Cobb, P.R.Young, S Meguid, J.L.Adams, E.J.Goldsmith
compound source
Molecule: Protein (Map Kinase P38)
Chain: A
Synonym: Mitogen Activated Protein Kinase
Engineered: Yes
Mutation: Yes
Other_details: Sb218655 Pyridinylimidazole
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21 (De3)
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cell_line: Bl21(De3)
Expression_system_vector: Pet15b
Expression_system_plasmid: Pet15b
Other_details: Yes
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.580 85.220 123.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand SB5 BindingDB enzyme
related structures by homologous chain: 1LEZ, 1M7Q
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of inhibitor selectivity in MAP kinases., Wang Z, Canagarajah BJ, Boehm JC, Kassisa S, Cobb MH, Young PR, Abdel-Meguid S, Adams JL, Goldsmith EJ, Structure 1998 Sep 15;6(9):1117-28. PMID:9753691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1bmk.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1BMK
  • CSU: Contacts of Structural Units for 1BMK
  • Likely Quarternary Molecular Structure file(s) for 1BMK
  • Retrieve 1BMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BMK from S2C, [Save to disk]
  • View 1BMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BMK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BMK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bmka_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1bmk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bmk] [1bmk_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1BMK: [S_TKc ] by SMART
  • Other resources with information on 1BMK
  • Community annotation for 1BMK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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