1BML Blood Clotting date May 25, 1999
title Complex Of The Catalytic Domain Of Human Plasmin And Strepto
authors X.Wang, X.C.Zhang
compound source
Molecule: Plasmin
Chain: A, B
Fragment: Catalytic Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pet11

Molecule: Streptokinase
Chain: C, D

Organism_scientific: Streptococcus Dysgalactiae Subsp. Equi
Organism_taxid: 119602
Strain: Subsp. Equisimilis
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.291
length a length b length c angle alpha angle beta angle gamma
80.030 125.050 86.790 90.00 105.41 90.00
method X-Ray Diffractionresolution 2.90 Å
enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1L4Z
Primary referenceCrystal structure of the catalytic domain of human plasmin complexed with streptokinase., Wang X, Lin X, Loy JA, Tang J, Zhang XC, Science 1998 Sep 11;281(5383):1662-5. PMID:9733510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1bml.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (1bml.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (1bml.pdb3.gz) 86 Kb
  • CSU: Contacts of Structural Units for 1BML
  • Likely Quarternary Molecular Structure file(s) for 1BML
  • Retrieve 1BML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BML from S2C, [Save to disk]
  • View 1BML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BML
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BML, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bmla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bmlb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bmlc1, region C:12-148 [Jmol] [rasmolscript] [script source]
        - Domain d1bmlc2, region C:149-284 [Jmol] [rasmolscript] [script source]
        - Domain d1bmlc3, region C:285-372 [Jmol] [rasmolscript] [script source]
        - Domain d1bmld1, region D:12-148 [Jmol] [rasmolscript] [script source]
        - Domain d1bmld2, region D:149-284 [Jmol] [rasmolscript] [script source]
        - Domain d1bmld3, region D:285-372 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bml from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bml_A] [1bml_D] [1bml_C] [1bml] [1bml_B]
  • SWISS-PROT database: [P00747] [P00779]
  • Domain organization of [PLMN_HUMAN] [STRP_STREQ] by SWISSPFAM
  • Domain found in 1BML: [Tryp_SPc ] by SMART
  • Other resources with information on 1BML
  • Community annotation for 1BML at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BML from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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