1BMO	Extracellular Module	date	Mar 25, 1997
title	Bm-40, Fsec Domain Pair
authors	E.Hohenester, P.Maurer, R.Timpl
compound		source
Molecule: Bm-40 Chain: A, B Fragment: Fsec Domain Pair, Residues 53 - 286 Synonym: Sparc, Osteonectin, Basement Membrane Protein Bm-4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: 293 Organ: Kidney Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
symmetry	Space Group: P 1 21 1	R_factor 0.262 R_Free 0.322
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.770 56.350 111.600 90.00 104.38 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	CA, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of a pair of follistatin-like and EF-hand calcium-binding domains in BM-40., Hohenester E, Maurer P, Timpl R, EMBO J 1997 Jul 1;16(13):3778-86. PMID:9233787

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (1bmo.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 1BMO CSU: Contacts of Structural Units for 1BMO Likely Quarternary Molecular Structure file(s) for 1BMO Structure Factors (206 Kb) Retrieve 1BMO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BMO from S2C, [Save to disk] Re-refined 1bmo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BMO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BMO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BMO, from MSDmotif at EBI Genome occurence of 1BMO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bmoa1, region A:136-286 [Jmol] [rasmolscript] [script source]     - Domain d1bmoa2, region A:54-77 [Jmol] [rasmolscript] [script source]     - Domain d1bmoa3, region A:78-135 [Jmol] [rasmolscript] [script source]     - Domain d1bmob1, region B:136-286 [Jmol] [rasmolscript] [script source]     - Domain d1bmob2, region B:54-77 [Jmol] [rasmolscript] [script source]     - Domain d1bmob3, region B:78-135 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bmo_A] [1bmo] [1bmo_B] SWISS-PROT database: [P09486] Domain organization of [SPRC_HUMAN] by SWISSPFAM Domains found in 1BMO: [FOLN] [KAZAL ] by SMART

Other resources with information on 1BMO

Community annotation for 1BMO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---