1BNZ SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX date
authors Gao, Y.G., Su, S.Y., Robinson, H., Padmanabhan, S., Lim, L., Mccrary, B.S., Edmondos, S.P., Shrive, J.W., Wang, A.H.J.
compound source
symmetry
R_factor
R_Free 0.2680000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1AZQ, 1CA5
Gene
Ontology
ChainFunctionProcessComponent
A
  • endoribonuclease activity


    • Primary referenceThe crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA., Gao YG, Su SY, Robinson H, Padmanabhan S, Lim L, McCrary BS, Edmondson SP, Shriver JW, Wang AH, Nat Struct Biol 1998 Sep;5(9):782-6. PMID:9731772
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1bnz.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1BNZ
  • Likely Quarternary Molecular Structure file(s) for 1BNZ
  • Retrieve 1BNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BNZ from S2C, [Save to disk]
    • View 1BNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BNZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BNZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bnza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bnz] [1bnz_B] [1bnz_A] [1bnz_C]
  • SWISS-PROT database: [P39476]
  • Domain organization of [DN72_SULSO] by SWISSPFAM
    • Other resources with information on 1BNZ
  • Community annotation for 1BNZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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