1BOR	Transcription Regulation	date	Sep 27, 1995
title	Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1 Representative Structure At Ph 7.5, 30 C, In The Presence Of Zinc
authors	K.L.B.Borden, P.S.Freemont
compound		source
Molecule: Transcription Factor Pml Chain: A Fragment: Ring Finger Domain, Residues 49 - 104 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
method	Solution NMR
ligand	ZN	enzyme
Primary reference	The solution structure of the RING finger domain from the acute promyelocytic leukaemia proto-oncoprotein PML., Borden KL, Boddy MN, Lally J, O'Reilly NJ, Martin S, Howe K, Solomon E, Freemont PS, EMBO J 1995 Apr 3;14(7):1532-41. PMID:7729428

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk] LPC: Ligand-Protein Contacts for 1BOR CSU: Contacts of Structural Units for 1BOR Original NMR restraints for 1BOR from PDB Retrieve 1BOR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BOR from S2C, [Save to disk]

View 1BOR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1BOR

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1BOR, from MSDmotif at EBI Genome occurence of 1BOR's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bor__, region [Jmol] [rasmolscript] [script source] Fold representative 1bor from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bor_A] SWISS-PROT database: [P29590] Domain organization of [PML_HUMAN] by SWISSPFAM Domain found in 1BOR: [RING ] by SMART Alignments of the sequence of 1BOR with the sequences similar proteins can be viewed for 1BOR's classification [PML_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PML_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1BOR

Community annotation for 1BOR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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