1BOR Transcription Regulation date Sep 27, 1995
title Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1 Representative Structure At Ph 7.5, 30 C, In The Presence Of Zinc
authors K.L.B.Borden, P.S.Freemont
compound source
Molecule: Transcription Factor Pml
Chain: A
Fragment: Ring Finger Domain, Residues 49 - 104
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the RING finger domain from the acute promyelocytic leukaemia proto-oncoprotein PML., Borden KL, Boddy MN, Lally J, O'Reilly NJ, Martin S, Howe K, Solomon E, Freemont PS, EMBO J 1995 Apr 3;14(7):1532-41. PMID:7729428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1BOR
  • CSU: Contacts of Structural Units for 1BOR
  • Original NMR restraints for 1BOR from PDB
  • Retrieve 1BOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BOR from S2C, [Save to disk]
  • View 1BOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BOR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BOR, from MSDmotif at EBI
  • Genome occurence of 1BOR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bor__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1bor from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bor_A] [1bor]
  • SWISS-PROT database: [P29590]
  • Domain organization of [PML_HUMAN] by SWISSPFAM
  • Domain found in 1BOR: [RING ] by SMART
  • Alignments of the sequence of 1BOR with the sequences similar proteins can be viewed for 1BOR's classification [PML_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PML_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BOR
  • Community annotation for 1BOR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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