1BPO Membrane Protein date Aug 11, 1998
title Clathrin Heavy-Chain Terminal Domain And Linker
authors E.T.Harr, A.Musacchio, S.C.Harrison, T.Kirchhausen
compound source
Molecule: Protein (Clathrin)
Chain: A, B, C
Fragment: Terminal Domain And Linker
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pbat4
symmetry Space Group: P 32 2 1
R_factor 0.226 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
205.825 205.825 87.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
note 1BPO (Molecule of the Month:pdb88)
related structures by homologous chain: 1C9L, 1UTC
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAtomic structure of clathrin: a beta propeller terminal domain joins an alpha zigzag linker., ter Haar E, Musacchio A, Harrison SC, Kirchhausen T, Cell 1998 Nov 13;95(4):563-73. PMID:9827808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (1bpo.pdb1.gz) 229 Kb
  • Biological Unit Coordinates (1bpo.pdb2.gz) 455 Kb
  • Biological Unit Coordinates (1bpo.pdb3.gz) 154 Kb
  • Biological Unit Coordinates (1bpo.pdb4.gz) 154 Kb
  • CSU: Contacts of Structural Units for 1BPO
  • Likely Quarternary Molecular Structure file(s) for 1BPO
  • Retrieve 1BPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BPO from S2C, [Save to disk]
  • View 1BPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BPO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BPO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bpoa2, region A:1-330 [Jmol] [rasmolscript] [script source]
        - Domain d1bpoa1, region A:331-487 [Jmol] [rasmolscript] [script source]
        - Domain d1bpob2, region B:1-330 [Jmol] [rasmolscript] [script source]
        - Domain d1bpob1, region B:331-493 [Jmol] [rasmolscript] [script source]
        - Domain d1bpoc2, region C:1-330 [Jmol] [rasmolscript] [script source]
        - Domain d1bpoc1, region C:331-487 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bpo] [1bpo_C] [1bpo_A] [1bpo_B]
  • SWISS-PROT database: [P11442]
  • Domain organization of [CLH_RAT] by SWISSPFAM
  • Other resources with information on 1BPO
  • Community annotation for 1BPO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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