1BQO Metalloprotease date Aug 17, 1998
title Discovery Of Potent, Achiral Matrix Metalloproteinase Inhibi
authors S.Pikul, K.L.M.Dunham, N.G.Almstead, B.De, M.G.Natchus, M.V.Anast S.J.Mcphail, C.E.Snider, Y.O.Taiwo, T.J.Rydel, C.M.Dunaway, F.Gu G.E.Mieling
compound source
Molecule: Stromelysin-1
Chain: A, B
Synonym: Mmp-3
Ec: 3.4.24.17
Engineered: Yes
Other_details: Complexed To Pg-117025
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.900 79.000 106.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, N25, ZN BindingDB enzyme Hydrolase E.C.3.4.24.17 BRENDA
related structures by homologous chain: 1B3D, 1YOU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of potent, achiral matrix metalloproteinase inhibitors., Pikul S, McDow Dunham KL, Almstead NG, De B, Natchus MG, Anastasio MV, McPhail SJ, Snider CE, Taiwo YO, Rydel T, Dunaway CM, Gu F, Mieling GE, J Med Chem 1998 Sep 10;41(19):3568-71. PMID:9733482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1bqo.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1bqo.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (1bqo.pdb3.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1BQO
  • CSU: Contacts of Structural Units for 1BQO
  • Likely Quarternary Molecular Structure file(s) for 1BQO
  • Retrieve 1BQO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQO from S2C, [Save to disk]
  • View 1BQO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BQO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bqoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bqob_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bqo_B] [1bqo_A] [1bqo]
  • SWISS-PROT database: [P08254]
  • Domain organization of [MMP3_HUMAN] by SWISSPFAM
  • Domain found in 1BQO: [ZnMc ] by SMART
  • Other resources with information on 1BQO
  • Community annotation for 1BQO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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