1BR8 Blood Clotting date Aug 26, 1998
title Implications For Function And Therapy Of A 2.9a Structure Of Binary-Complexed Antithrombin
authors R.Skinner, W.S.W.Chang, L.Jin, X.Y.Pei, J.A.Huntington, J.P.Abrahams, R.W.Carrell, D.A.Lomas
compound source
Molecule: Protein (Antithrombin-III)
Chain: L, I
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: 1q23-25
Tissue: Plasma

Molecule: Protein (Peptide)
Chain: P
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Was Chemically Synthesized.
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.120 101.690 87.020 90.00 104.36 90.00
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1ANT, 1AZX
Gene
Ontology
ChainFunctionProcessComponent
I, L


Primary referenceImplications for function and therapy of a 2.9 A structure of binary-complexed antithrombin., Skinner R, Chang WS, Jin L, Pei X, Huntington JA, Abrahams JP, Carrell RW, Lomas DA, J Mol Biol 1998;283(1):9-14. PMID:9761669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1br8.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (1br8.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (1br8.pdb3.gz) 133 Kb
  • CSU: Contacts of Structural Units for 1BR8
  • Likely Quarternary Molecular Structure file(s) for 1BR8
  • Retrieve 1BR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BR8 from S2C, [Save to disk]
  • View 1BR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BR8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BR8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1br8i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1br8l_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1br8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1br8_P] [1br8_L] [1br8] [1br8_I]
  • SWISS-PROT database: [P01008]
  • Domain organization of [ANT3_HUMAN] by SWISSPFAM
  • Domain found in 1BR8: [SERPIN ] by SMART
  • Alignments of the sequence of 1BR8 with the sequences similar proteins can be viewed for 1BR8's classification [ANT3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ANT3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BR8
  • Community annotation for 1BR8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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