1BTP Hydrolase (Serine Proteinase) date Aug 11, 1995
title Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4- (Amidinophenoxy)-Carbonyl]Phenyl]-2-Methyl-2-Propenoyl]-N- Allylglycine Methanesulfonate To Bovine Trypsin, Revealed By The Crystal Structure Of The Complex
authors Y.Odagaki, H.Nakai, K.Senokuchi, M.Kawamura, N.Hamanaka, M.Nakamura, K.Tomoo, T.Ishida
compound source
Molecule: Beta-Trypsin
Chain: A
Ec: 3.4.21.4
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.740 63.080 69.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1ANE, 1TRN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnique binding of a novel synthetic inhibitor, N-[3-[4-[4-(amidinophenoxy)carbonyl]phenyl]-2-methyl-2-propenoyl]- N-allylglycine methanesulfonate, to bovine trypsin, revealed by the crystal structure of the complex., Odagaki Y, Nakai H, Senokuchi K, Kawamura M, Hamanaka N, Nakamura M, Tomoo K, Ishida T, Biochemistry 1995 Oct 3;34(39):12849-53. PMID:7548040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1btp.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1BTP
  • CSU: Contacts of Structural Units for 1BTP
  • Likely Quarternary Molecular Structure file(s) for 1BTP
  • Structure Factors (104 Kb)
  • Retrieve 1BTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BTP from S2C, [Save to disk]
  • Re-refined 1btp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BTP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BTP, from MSDmotif at EBI
  • Genome occurence of 1BTP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1btp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1btp] [1btp_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1BTP: [Tryp_SPc ] by SMART
    • Other resources with information on 1BTP
  • Community annotation for 1BTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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