1BUY Cytokine date Sep 08, 1998
title Human Erythropoietin, Nmr Minimized Average Structure
authors J.C.Cheetham, D.M.Smith, K.H.Aoki, J.L.Stevenson, T.J.Hoeffel, R.S.Syed, J.Egrie, T.S.Harvey
compound source
Molecule: Protein (Erythropoietin)
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Synthetic Gene
methodSolution NMR
related structures by homologous chain: 1CN4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of human erythropoietin and a comparison with its receptor bound conformation., Cheetham JC, Smith DM, Aoki KH, Stevenson JL, Hoeffel TJ, Syed RS, Egrie J, Harvey TS, Nat Struct Biol 1998 Oct;5(10):861-6. PMID:9783743
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1BUY
  • Retrieve 1BUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BUY from S2C, [Save to disk]
  • View 1BUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BUY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BUY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1buya_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1buy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1buy_A] [1buy]
  • SWISS-PROT database: [P01588]
  • Domain organization of [EPO_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1BUY with the sequences similar proteins can be viewed for 1BUY's classification [EPO_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EPO_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BUY
  • Community annotation for 1BUY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BUY from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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