1BXY Ribosome date Oct 09, 1998
title Crystal Structure Of Ribosomal Protein L30 From Thermus Ther At 1.9 A Resolution: Conformational Flexibility Of The Mole
authors R.Fedorov, N.Nevskaya, A.Khairullina, S.Tishchenko, A.Mikhailov, S.Nikonov
compound source
Molecule: Protein (Ribosomal Protein L30)
Chain: A, B
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Strain: Vk1
Gene: Rpl30
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet11c
Expression_system_gene: Rpl30
Other_details: Cloned Gene
symmetry Space Group: P 32 2 1
R_factor 0.203 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
63.500 63.500 77.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
A, B

Primary referenceStructure of ribosomal protein L30 from Thermus thermophilus at 1.9 A resolution: conformational flexibility of the molecule., Fedorov R, Nevskaya N, Khairullina A, Tishchenko S, Mikhailov A, Garber M, Nikonov S, Acta Crystallogr D Biol Crystallogr 1999 Nov;55(11):1827-33. PMID:10531479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1bxy.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (1bxy.pdb2.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1BXY
  • Likely Quarternary Molecular Structure file(s) for 1BXY
  • Structure Factors (99 Kb)
  • Retrieve 1BXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BXY from S2C, [Save to disk]
  • Re-refined 1bxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BXY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BXY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bxya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bxyb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bxy_A] [1bxy] [1bxy_B]
  • SWISS-PROT database: [P74909]
  • Domain organization of [RL30_THETH] by SWISSPFAM
  • Other resources with information on 1BXY
  • Community annotation for 1BXY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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