1BXZ Oxidoreductase date Oct 09, 1998
title Crystal Structure Of A Thermophilic Alcohol Dehydrogenase Su Complex From Thermoanaerobacter Brockii
authors C.Li, J.Heatwole, S.Soelaiman, M.Shoham
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A, B, C, D
Fragment: Nucleotide-Binding Domain, Catalytic Domain
Ec: 1.1.1.2
Engineered: Yes
 Organism_scientific: Thermoanaerobacter Brockii
Organism_taxid: 29323
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.450 123.080 168.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.99 Å
ligand CL, MG, SBT, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
related structures by homologous chain: 1YKF
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of a thermophilic alcohol dehydrogenase substrate complex suggests determinants of substrate specificity and thermostability., Li C, Heatwole J, Soelaiman S, Shoham M, Proteins 1999 Dec 1;37(4):619-27. PMID:10651277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (1bxz.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 1BXZ
  • CSU: Contacts of Structural Units for 1BXZ
  • Likely Quarternary Molecular Structure file(s) for 1BXZ
  • Structure Factors (269 Kb)
  • Retrieve 1BXZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BXZ from S2C, [Save to disk]
  • Re-refined 1bxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BXZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BXZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BXZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bxza1, region A:1-139,A:314-352 [Jmol] [rasmolscript] [script source]
        - Domain d1bxza2, region A:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzb1, region B:1-139,B:314-352 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzb2, region B:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzc1, region C:1-139,C:314-352 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzc2, region C:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzd1, region D:1-139,D:314-352 [Jmol] [rasmolscript] [script source]
        - Domain d1bxzd2, region D:140-313 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bxz_D] [1bxz_B] [1bxz] [1bxz_C] [1bxz_A]
  • SWISS-PROT database: [P14941]
  • Domain organization of [ADH_THEBR] by SWISSPFAM
    • Other resources with information on 1BXZ
  • Community annotation for 1BXZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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