1BY6 Signaling Protein date Dec 03, 1999
title Peptide Of Human Apolipoprotein C-II
authors R.Storjohann, A.Rozek, J.T.Sparrow, R.J.Cushley
compound source
Molecule: Apolipoprotein C-II
Chain: A
Fragment: Residues 44-79
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Peptide Was Chemically Synthesized On A 430a Synthesizer (Pe Applied Biosystems, Foster City, Ca, U The Solid Phase Method Using T-Bocbenzyl Protecting Groups Phenyl-Acetamidomethyl-Polystyrene Support With Fast Hbtuh Coupling. After Synthesis The Peptide Was Deprotected And C From The Resin With Tmsbr.
methodSolution NMR
related structures by homologous chain: 1O8T
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a biologically active fragment of human serum apolipoprotein C-II in the presence of sodium dodecyl sulfate and dodecylphosphocholine., Storjohann R, Rozek A, Sparrow JT, Cushley RJ, Biochim Biophys Acta 2000 Jul 19;1486(2-3):253-64. PMID:10903476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1by6.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1BY6
  • Retrieve 1BY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BY6 from S2C, [Save to disk]
    • View 1BY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BY6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BY6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1by6a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1by6_A] [1by6]
  • SWISS-PROT database: [P02655]
  • Domain organization of [APOC2_HUMAN] by SWISSPFAM
    • Other resources with information on 1BY6
  • Community annotation for 1BY6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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