1BZ8 Signaling Protein date Nov 08, 1998
title Transthyretin (Del Val122)
authors N.Schormann, T.Uemichi, M.D.Benson
compound source
Molecule: Protein (Transthyretin)
Chain: A, B
Synonym: Prealbumin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Hb101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcz11
Other_details: Variant Was Produced By Site Directed Mutage Using A Mismatch Primer And The Normal R-Ttr Pcz11 Constru
symmetry Space Group: P 21 21 2
R_factor 0.193 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.330 86.750 65.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1DVX, 1IIK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1bz8.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1BZ8
  • Likely Quarternary Molecular Structure file(s) for 1BZ8
  • Structure Factors (96 Kb)
  • Retrieve 1BZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BZ8 from S2C, [Save to disk]
  • Re-refined 1bz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BZ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bz8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bz8b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1bz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bz8] [1bz8_A] [1bz8_B]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 1BZ8: [TR_THY ] by SMART
  • Alignments of the sequence of 1BZ8 with the sequences similar proteins can be viewed for 1BZ8's classification [TTHY_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TTHY_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1BZ8
  • Community annotation for 1BZ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BZ8 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science