1BZJ Hydrolase date Oct 29, 1998
title Human Ptp1b Complexed With Tpicooh
authors M.R.Groves, Z.J.Yao, D.T.B.Barford Jr.
compound source
Molecule: Protein (Protein-Tyrosine-Phosphatase)
Chain: A
Fragment: Catalytic Domain
Synonym: Ptp1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.207 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.450 88.450 104.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand PIC BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1OET, 1Q6J
Primary referenceStructural basis for inhibition of the protein tyrosine phosphatase 1B by phosphotyrosine peptide mimetics., Groves MR, Yao ZJ, Roller PP, Burke TR Jr, Barford D, Biochemistry 1998 Dec 22;37(51):17773-83. PMID:9922143
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1bzj.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1BZJ
  • CSU: Contacts of Structural Units for 1BZJ
  • Likely Quarternary Molecular Structure file(s) for 1BZJ
  • Structure Factors (152 Kb)
  • Retrieve 1BZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BZJ from S2C, [Save to disk]
  • Re-refined 1bzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BZJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bzja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1bzj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bzj_A] [1bzj]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 1BZJ: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 1BZJ
  • Community annotation for 1BZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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