1C01 Antimicrobial Protein date Jul 13, 1999
title Solution Structure Of Miamp1, A Plant Antimicrobial Protein
authors A.M.Mcmanus, K.J.Nielsen, J.P.Marcus, S.J.Harrison, J.L.Green, J.M.Manners, D.J.Craik
compound source
Molecule: Antimicrobial Peptide 1
Chain: A
 Organism_scientific: Macadamia Integrifolia
Organism_taxid: 60698
Organ: Nut Kernel
methodSolution NMR
note 1C01 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMiAMP1, a novel protein from Macadamia integrifolia adopts a Greek key beta-barrel fold unique amongst plant antimicrobial proteins., McManus AM, Nielsen KJ, Marcus JP, Harrison SJ, Green JL, Manners JM, Craik DJ, J Mol Biol 1999 Oct 29;293(3):629-38. PMID:10543955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (1c01.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1C01
  • Retrieve 1C01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C01 from S2C, [Save to disk]
    • View 1C01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C01
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C01, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c01a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c01_A] [1c01]
  • SWISS-PROT database: [P80915]
  • Domain organization of [AMP1_MACIN] by SWISSPFAM
    • Other resources with information on 1C01
  • Community annotation for 1C01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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