1C16 Immune System date Jul 20, 1999
title Crystal Structure Analysis Of The Gammadelta T Cell Ligand T22
authors C.Wingren, M.P.Crowley, M.Degano, Y.Chien, I.A.Wilson
compound source
Molecule: Mhc-Like Protein T22
Chain: A, C, E, G
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Protein (Beta-2-Microglobulin)
Chain: B, D, F, H
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.284 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.110 91.470 122.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
H, F, D, B
  • cellular response to iron io...

    • Primary referenceCrystal structure of a gammadelta T cell receptor ligand T22: a truncated MHC-like fold., Wingren C, Crowley MP, Degano M, Chien Y, Wilson IA, Science 2000 Jan 14;287(5451):310-4. PMID:10634787
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (1c16.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (1c16.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (1c16.pdb3.gz) 62 Kb
  • Biological Unit Coordinates (1c16.pdb4.gz) 63 Kb
  • Biological Unit Coordinates (1c16.pdb5.gz) 236 Kb
  • CSU: Contacts of Structural Units for 1C16
  • Likely Quarternary Molecular Structure file(s) for 1C16
  • Structure Factors (292 Kb)
  • Retrieve 1C16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C16 from S2C, [Save to disk]
  • Re-refined 1c16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1C16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C16
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C16, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c16a2, region A:1-180 [Jmol] [rasmolscript] [script source]
        - Domain d1c16a1, region A:181-276 [Jmol] [rasmolscript] [script source]
        - Domain d1c16b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1c16c2, region C:1-180 [Jmol] [rasmolscript] [script source]
        - Domain d1c16c1, region C:181-276 [Jmol] [rasmolscript] [script source]
        - Domain d1c16d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1c16e2, region E:1-180 [Jmol] [rasmolscript] [script source]
        - Domain d1c16e1, region E:181-276 [Jmol] [rasmolscript] [script source]
        - Domain d1c16f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1c16g2, region G:1-180 [Jmol] [rasmolscript] [script source]
        - Domain d1c16g1, region G:181-276 [Jmol] [rasmolscript] [script source]
        - Domain d1c16h_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c16_G] [1c16_B] [1c16_A] [1c16] [1c16_D] [1c16_H] [1c16_F] [1c16_C] [1c16_E]
  • SWISS-PROT database: [P61769] [Q31615]
  • Domain organization of [B2MG_HUMAN] [Q31615_MOUSE] by SWISSPFAM
  • Domain found in 1C16: [IGc1 ] by SMART
    • Other resources with information on 1C16
  • Community annotation for 1C16 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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