1C1X Oxidoreductase date Jul 22, 1999
title L-Phenylalanine Dehydrogenase Structure In Ternary Complex W And L-3-Phenyllactate
authors J.L.Vanhooke, J.B.Thoden
compound source
Molecule: L-Phenylalanine Dehydrogenase
Chain: A
Engineered: Yes
 Organism_scientific: Rhodococcus Sp.
Organism_taxid: 1831
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Plasmid
Expression_system_plasmid: Pbl-1b

Molecule: Protein (L-Phenylalanine Dehydrogenase)
Chain: B
Engineered: Yes
Organism_scientific: Rhodococcus Sp.
Organism_taxid: 1831
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.600 110.400 113.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand HFA, IPA, K, NA, NAD, PO4 enzyme
related structures by homologous chain: 1BW9, 1C1D
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity., Brunhuber NM, Thoden JB, Blanchard JS, Vanhooke JL, Biochemistry 2000 Aug 8;39(31):9174-87. PMID:10924111
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1c1x.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 1C1X
  • CSU: Contacts of Structural Units for 1C1X
  • Likely Quarternary Molecular Structure file(s) for 1C1X
  • Retrieve 1C1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C1X from S2C, [Save to disk]
    • View 1C1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C1X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1C1X 1C1XA 1C1XB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C1X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c1xa2, region A:1-148 [Jmol] [rasmolscript] [script source]
        - Domain d1c1xa1, region A:149-348 [Jmol] [rasmolscript] [script source]
        - Domain d1c1xb2, region B:1-148 [Jmol] [rasmolscript] [script source]
        - Domain d1c1xb1, region B:149-347 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c1x_B] [1c1x] [1c1x_A]
  • SWISS-PROT database: [Q59771]
  • Domain organization of [Q59771_RHOSO] by SWISSPFAM
  • Domain found in 1C1X: [ELFV_dehydrog ] by SMART
    • Other resources with information on 1C1X
  • Community annotation for 1C1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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