1C3R Lyase date Jul 28, 1999
title Crystal Structure Of An Hdac Homolog Complexed With Trichost
authors M.S.Finnin, J.R.Donigian, N.P.Pavletich
compound source
Molecule: Hdlp (Histone Deacetylase-Like Protein)
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-4t3
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.400 94.400 156.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand TSN, ZN enzyme
related structures by homologous chain: 1C3P, 1C3S
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors., Finnin MS, Donigian JR, Cohen A, Richon VM, Rifkind RA, Marks PA, Breslow R, Pavletich NP, Nature 1999 Sep 9;401(6749):188-93. PMID:10490031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1c3r.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 1C3R
  • CSU: Contacts of Structural Units for 1C3R
  • Likely Quarternary Molecular Structure file(s) for 1C3R
  • Retrieve 1C3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C3R from S2C, [Save to disk]
    • View 1C3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C3R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C3R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c3ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c3rb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c3r] [1c3r_A] [1c3r_B]
  • SWISS-PROT database: [O67135]
  • Domain organization of [O67135_AQUAE] by SWISSPFAM
    • Other resources with information on 1C3R
  • Community annotation for 1C3R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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