1C72 Transferase date Feb 02, 2000
title Tyr115, Gln165 And Trp209 Contribute To The 1,2-Epoxy-3-(P- Nitrophenoxy)Propane Conjugating Activities Of Glutathione S-Transferase Cgstm1-1
authors M.K.Chern, T.C.Wu, C.H.Hsieh, C.C.Chou, L.F.Liu, I.C.Kuan, Y.H.Yeh, C.D.Hsiao, M.F.Tam
compound source
Molecule: Protein (Glutathione S-Transferase)
Chain: A, B, C, D
Synonym: Gsts
Ec: 2.5.1.18
Engineered: Yes
Other_details: 1,2-Epoxy-3-(P-Nitrophenoxy)Propane
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
symmetry Space Group: C 2 2 21
R_factor 0.190 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.600 136.650 125.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand EPY enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1GTU, 3GTU
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTyr115, gln165 and trp209 contribute to the 1, 2-epoxy-3-(p-nitrophenoxy)propane-conjugating activity of glutathione S-transferase cGSTM1-1., Chern MK, Wu TC, Hsieh CH, Chou CC, Liu LF, Kuan IC, Yeh YH, Hsiao CD, Tam MF, J Mol Biol 2000 Jul 28;300(5):1257-69. PMID:10903867
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1c72.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1c72.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1C72
  • CSU: Contacts of Structural Units for 1C72
  • Likely Quarternary Molecular Structure file(s) for 1C72
  • Structure Factors (187 Kb)
  • Retrieve 1C72 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C72 from S2C, [Save to disk]
  • Re-refined 1c72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C72
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C72, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c72a2, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1c72a1, region A:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1c72b2, region B:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1c72b1, region B:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1c72c2, region C:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1c72c1, region C:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1c72d2, region D:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1c72d1, region D:85-217 [Jmol] [rasmolscript] [script source]
  • Fold representative 1c72 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c72_B] [1c72_A] [1c72_C] [1c72] [1c72_D]
  • SWISS-PROT database: [P20136]
  • Domain organization of [GSTM2_CHICK] by SWISSPFAM
  • Other resources with information on 1C72
  • Community annotation for 1C72 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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