1C9T Hydrolase Hydrolase Inhibitor date Aug 03, 1999
title Complex Of Bdellastasin With Bovine Trypsin
authors U.Rester, W.Bode, M.Moser, M.A.Parry, R.Huber, E.Auerswald
compound source
Molecule: Trypsin
Chain: A, B, C, D, E, F
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Secretion: Saliva

Molecule: Bdellastasin
Chain: G, H, I, J, K, L
Engineered: Yes

Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.220 108.780 95.710 90.00 93.70 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L
  • serine-type endopeptidase in...


  • Primary referenceStructure of the complex of the antistasin-type inhibitor bdellastasin with trypsin and modelling of the bdellastasin-microplasmin system., Rester U, Bode W, Moser M, Parry MA, Huber R, Auerswald E, J Mol Biol 1999 Oct 15;293(1):93-106. PMID:10512718
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (1c9t.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1c9t.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (1c9t.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (1c9t.pdb4.gz) 45 Kb
  • Biological Unit Coordinates (1c9t.pdb5.gz) 45 Kb
  • Biological Unit Coordinates (1c9t.pdb6.gz) 45 Kb
  • CSU: Contacts of Structural Units for 1C9T
  • Likely Quarternary Molecular Structure file(s) for 1C9T
  • Structure Factors (176 Kb)
  • Retrieve 1C9T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C9T from S2C, [Save to disk]
  • Re-refined 1c9t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C9T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C9T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C9T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c9ta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c9tb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1c9tc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1c9td_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1c9te_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1c9tf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1c9tg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1c9th_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1c9ti_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1c9tj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1c9tk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1c9tl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1c9t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c9t_A] [1c9t_C] [1c9t_B] [1c9t] [1c9t_L] [1c9t_I] [1c9t_G] [1c9t_H] [1c9t_F] [1c9t_K] [1c9t_J] [1c9t_D] [1c9t_E]
  • SWISS-PROT database: [P82107] [P00760]
  • Domain organization of [BDEL_HIRME] [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1C9T: [Tryp_SPc ] by SMART
  • Other resources with information on 1C9T
  • Community annotation for 1C9T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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